Semantic Mining (NOE 507505)
Project Index
Note: This index covers the activities of Semantic Mining, with special emphasis on the educational material and the public deliverables. All hyperlinks are to the start of the individual presentations or tutorials i.e. you may need to scroll down, or through the slides, in order to view the required information. This index is deliberately very detailed in order to show the extent of the data available, and to improve retrieval.
For a more concise overview, please use the graphical map.
C-NPU
Cancer, ontologies (schema) CareQuest Catalogs, as non-ontologies CatAnat CCAM CEN
CEN 13606
CEN/TC 251 Central Intelligent Search Agent (ISA-C) Chinking, NLP process Chunking, NLP process CLEF project
Clinical terminologies
Coding in primary health care
Cohen's k , health care statistics Coling workshop (Geneva 2004), proceedings COM 356 (2004), e-health action plan Committee for Standardization, European, see CEN Committee on Nomenclature, Properties and Units Computerised health record, see Electronic health records Conceptual schema
Containment relation Contract, Semantic Mining Corpus repository explorer Curators, text mining vs
e-Health records, see Electronic health records EBIMed Edinburgh mouse atlas project Educational material, from Semantic Mining eHealth Standardization Co-ordination Group EHR, see Electronic health records eHSCG Electronic health records
access, legal aspects archetypes see Archetypes architecture architecture (deliverable D26.1) biomedical ontologies and capturing user requirements care process
CEN 13606, see CEN 13606 CEN interoperability standards characteristics characteristics (tutorial) clinical introduction complexity and number of items concept system development context of context of, requirements context of, types and descriptions deliverable D26.1 deliverable D26.2 ethico-legal issues European interoperability example extract, context and content Federation approach folder use cases supported by generation of patient-friendly texts generic - challenges generic reference model requirement harmonisation of standards, link 1 harmonisation of standards, link 2 history HL7
integration with ontologies/terminologies
interoperability
logical building blocks
mapping to RIM (reference information model), problems
models
models, development
open EHRopen EHR Foundation, see open EHR Foundationquality, criteria for
reasons for need for
record information
research and challenges of
research projects
risk areas of communication breakdown
role
scale of problem
security issues
Semantic Mining partner collaboration
standardisation, reasons for
standards, inputs for
structured data and types
tutorial on
workshop handout
see also WP26 (Electronic health records)
EN 1614 EN13606, see CEN 13606 Engineering ontologies, see Ontology engineering Epistemology, ontology confusion Errors, in health statistics Ethico-legal issues, electronic health records European (CEN) interoperability standards, see CEN, interoperability standards European Committee for Standardization, see CEN Evidence-based medicine, requirements for EHR Expression of interest, Semantic Mining
Medical classifications, problems Medical diagnostics, hierarchy (ontology workshop) Medical dictionary, see Multi-lingual medical dictionary Medical domain, ontology engineering Medical ontologies
Medical procedure coding system (MPS) Medical semantic web
Mereology, background MeSH use in NeLI ? Metathesaurus, UMLS, see UMLS Morbidity, statistics
MorphoSaurus Mortality, statistics
Multilingual directory, Cumul LOINC-based test directory
OBO Relations Ontology Ogden's pyramid On9.3, as medical ontology Ontological analysis, role for semantic web Ontological gaps Ontologies
anatomy, see Anatomy authoring issues axiomatic, building biomedical biomedical reference, see Biomedical reference ontology blood pressure, link 1 blood pressure, link 2 cancer schema clinical terminologies colon cancer model complexity, effects on user components and concepts concepts conceptual schema vs consistency requirements core (reference) core (reference), examples core (reference), medical definitions, strategies and types description logics-based design/use in information-providing dialogue systems disease domain domain, complexity domain, design for information-providing systems domain, problems with Edinburgh mouse atlas project EHR integration with engineering, see Ontology engineering evaluation procedure expressions and syntax fitness for purpose formalism limitations foundational, see Foundational ontologies frame-based systems functional genomics implementation-driven in natural language generation in public health information extraction using knowledge bases vs laboratory medicine, progress linguistic Linnaean logic-based logic-based, SNOMED-CT report management (scale, multiple and complexity) medical, see Medical ontologies natural language OBO Relations Open Biological (OBO) pain schema Physiology Reference (PRO) precision precision axis quality (precision and coverage) quality assurance quality assurance, barriers and limitations quality assurance, needs for quality assurance, properties covered reasoning support, services role, and meaning, for semantic web schema constraints and metamodels semantic web SPAN sequence spectrum temperature text mining role use in dialogue systems user descriptions and types uses
Ontology (science/philosophy)
Open Biological Ontologies (OBO)
open EHROpen EHR FoundationOpen GALEN
OPS-301, procedure classification Ordinal scale, laboratory medicine (presentation on) Ordinary Action Theory, health (Fulford) OWL family
OWL-DL
Pain, ontologies (schema) Papers published by Semantic Mining PAR relation (has_parent), in UMLS Parthood relation, see part_of relations Partonomy Parts and wholes, anatomy standardization part_of relationsPASTA, information extraction
Patient mobility, e-health
Patient Orientated Medical Record
Patient-specific model, ontology PDFs, mark-up (semantic web) Penn Treebank tag set PGNs, comparison of databases
PhD Mobility Programme
Physiology Reference Ontology (PRO)
Primary health care, coding of patient records (Sweden) Pro-active alert agents (PAA) Procedure classification
Protein and gene names Protégé OWL, see OWL
Publications, by Semantic Mining
Scales, temperature Search engines, semantic Security, electronic health records Semantic document production, Statistics Sweden Semantic interoperability, in biomedicine Semantic modeling Semantic network, UMLS Semantic search engines Semantic web
SMBM, report SNAP and SPAN
SNOMED-CT
SOFG (Standards and Ontologies for Functional Genomics) Software, archetype editor, and screens from Statistics, health, see Health care statistics Statistics Sweden, semantic document production Summer School, Joint European, on Biomedical Informatics Surgery, anatomy and, ontology Swedish Terminology Conference Swiss-Prot, disease ontology applied to Synapses project, electronic health records
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