Semantic Mining (NOE 507505)
Project Index
Note: This index covers the activities of Semantic Mining, with special emphasis on the educational material and the public deliverables. All hyperlinks are to the start of the individual presentations or tutorials i.e. you may need to scroll down, or through the slides, in order to view the required information. This index is deliberately very detailed in order to show the extent of the data available, and to improve retrieval.
For a more concise overview, please use the graphical map.
C-NPU
Cancer, ontologies (schema)
CareQuest
Catalogs, as non-ontologies
CatAnat
CCAM
CEN
CEN 13606
CEN/TC 251
Central Intelligent Search Agent (ISA-C)
Chinking, NLP process
Chunking, NLP process
Classification
CLEF project
Clinical bioinformatics
Clinical terminologies
Coding in primary health care
Cohen's k , health care statistics
Coling workshop (Geneva 2004), proceedings
COM 356 (2004), e-health action plan
Committee for Standardization, European, see CEN
Committee on Nomenclature, Properties and Units
Computerised health record, see Electronic health records
Conceptual schema
Conference reports
Containment relation
Contract, Semantic Mining
Corpus (corpora)
Corpus repository explorer
Cumul LOINC
Curators, text mining vs
e-Health
e-Health records, see Electronic health records
EBIMed
Edinburgh mouse atlas project
Educational material, from Semantic Mining
eHealth Standardization Co-ordination Group
EHR, see Electronic health records
eHSCG
Electronic health records
access, legal aspects
archetypes see Archetypes
architecture
architecture (deliverable D26.1)
biomedical ontologies and
capturing user requirements
care process
CEN 13606, see CEN 13606
CEN interoperability standards
characteristics
characteristics (tutorial)
clinical introduction
complexity and number of items
concept system development
context of
context of, requirements
context of, types and descriptions
deliverable D26.1
deliverable D26.2
ethico-legal issues
European interoperability
example
extract, context and content
Federation approach
folder use cases supported by
generation of patient-friendly texts
generic - challenges
generic reference model requirement
harmonisation of standards, link 1
harmonisation of standards, link 2
history
HL7
integration with ontologies/terminologies
interoperability
logical building blocks
mapping to RIM (reference information model), problems
models
models, development
open EHR
open EHR Foundation, see open EHR Foundation
quality, criteria for
reasons for need for
record information
research and challenges of
research projects
risk areas of communication breakdown
role
scale of problem
security issues
Semantic Mining partner collaboration
standardisation, reasons for
standards, inputs for
structured data and types
tutorial on
workshop handout
see also WP26 (Electronic health records)
EN 1614
EN13606, see CEN 13606
Engineering ontologies, see Ontology engineering
Epistemology, ontology confusion
Errors, in health statistics
Ethico-legal issues, electronic health records
European (CEN) interoperability standards, see CEN, interoperability standards
European Committee for Standardization, see CEN
Evidence-based medicine, requirements for EHR
Expression of interest, Semantic Mining
Medical classifications, problems
Medical diagnostics, hierarchy (ontology workshop)
Medical dictionary, see Multi-lingual medical dictionary
Medical domain, ontology engineering
Medical informatics
Medical ontologies
Medical procedure coding system (MPS)
Medical records
Medical semantic web
Medical terminologies
MEDLINE
Mereology, background
MeSH use in NeLI ?
Metathesaurus, UMLS, see UMLS
Morbidity, statistics
MorphoSaurus
Mortality, statistics
Multi-lingual medical dictionary
Multilingual directory, Cumul LOINC-based test directory
OBO Relations Ontology
Ogden's pyramid
On9.3, as medical ontology
Ontological analysis, role for semantic web
Ontological gaps
Ontologies
anatomy, see Anatomy authoring issues
axiomatic, building
biomedical
biomedical reference, see Biomedical reference ontology
blood pressure, link 1
blood pressure, link 2
cancer schema
clinical terminologies
colon cancer model
complexity, effects on user
components and concepts
concepts
conceptual schema vs
consistency requirements
core (reference)
core (reference), examples
core (reference), medical
definitions, strategies and types
description logics-based
design/use in information-providing dialogue systems
disease
domain
domain, complexity
domain, design for information-providing systems
domain, problems with
Edinburgh mouse atlas project
EHR integration with
engineering, see Ontology engineering
evaluation procedure
expressions and syntax
fitness for purpose
formalism limitations
foundational, see Foundational ontologies
frame-based systems
functional genomics
implementation-driven
in natural language generation
in public health
information extraction using
knowledge bases vs
laboratory medicine, progress
linguistic
Linnaean
logic-based
logic-based, SNOMED-CT report
management (scale, multiple and complexity)
medical, see Medical ontologies
natural language
OBO Relations
Open Biological (OBO)
pain schema
Physiology Reference (PRO)
precision
precision axis
quality (precision and coverage)
quality assurance
quality assurance, barriers and limitations
quality assurance, needs for
quality assurance, properties covered
reasoning support, services
role, and meaning, for semantic web
schema constraints and metamodels
semantic web
SPAN sequence
spectrum
temperature
text mining role
use in dialogue systems
user descriptions and types
uses
Ontology (science/philosophy)
Ontology engineering
Open Biological Ontologies (OBO)
open EHR
Open EHR Foundation
Open GALEN
OPS-301, procedure classification
Ordinal scale, laboratory medicine (presentation on)
Ordinary Action Theory, health (Fulford)
OWL
OWL family
OWL-DL
Pain, ontologies (schema)
Papers published by Semantic Mining
PAR relation (has_parent), in UMLS
Parthood relation, see part_of relations
Partonomy
Parts and wholes, anatomy standardization
part_of relations
PASTA, information extraction
Patient information
Patient mobility, e-health
Patient Orientated Medical Record
Patient-friendly documentation systems
Patient-specific model, ontology
PDFs, mark-up (semantic web)
Penn Treebank tag set
PGNs, comparison of databases
PhD
PhD Mobility Programme
Philosophy
Physiology Reference Ontology (PRO)
Precision
Primary health care, coding of patient records (Sweden)
Pro-active alert agents (PAA)
Procedure classification
Protein and gene names
Protégé OWL, see OWL
Public health
Publications, by Semantic Mining
Scales, temperature
Search engines, semantic
Security, electronic health records
Semantic document production, Statistics Sweden
Semantic interoperability, in biomedicine
Semantic Mining
Semantic modeling
Semantic network, UMLS
Semantic search engines
Semantic web
SMBM, report
SNAP and SPAN
SNOMED-CT
SOFG (Standards and Ontologies for Functional Genomics)
Software, archetype editor, and screens from
Standardization
Standards
Statistics, health, see Health care statistics
Statistics Sweden, semantic document production
Summer School, Joint European, on Biomedical Informatics
Surgery, anatomy and, ontology
Sweden
Swedish Terminology Conference
Swiss-Prot, disease ontology applied to
Synapses project, electronic health records
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